❓People Also Ask — Enzymes
Questions students most frequently search about this chapter. Answers are direct and exam-focused.
QAre all enzymes proteins?
Almost all — except ribozymes, which are RNA molecules with catalytic activity (e.g., in ribosomes and self-splicing RNAs).
QWhat is the difference between a coenzyme and a prosthetic group?
Coenzymes are organic cofactors that bind loosely and transiently (e.g., NAD⁺, FAD). Prosthetic groups are tightly/covalently bound to the enzyme (e.g., heme in catalase).
QHow does temperature affect enzyme activity?
Rate increases with temperature up to optimum (~37°C for humans, Q₁₀ ≈ 2). Above optimum → denaturation. Below optimum → inactive but reversible.
QHow does pH affect enzymes?
Each enzyme has an optimum pH. Extreme pH changes the ionization of active-site amino acids, disrupting substrate binding and catalysis.
QWhy does reaction rate plateau at high substrate concentration?
Because all active sites are saturated. Rate reaches Vmax — no further increase until more enzyme is added.
QWhat is the difference between Vmax and Km?
Vmax is the maximum reaction rate (all active sites full). Km is the substrate concentration at half-Vmax; low Km = high affinity.
QWhat is an allosteric enzyme?
An enzyme with a regulatory site (allosteric site) distinct from the active site. Binding of modulators changes activity. Usually multi-subunit with sigmoidal kinetics.
QWhat is a competitive inhibitor?
An inhibitor that resembles the substrate and binds to the active site. Can be outcompeted by increasing substrate concentration. Vmax unchanged, Km increased.
QWhat is a non-competitive inhibitor?
An inhibitor that binds to an allosteric site, changing the enzyme's shape. Not overcome by substrate. Vmax decreases, Km unchanged.
QWhat is malonate an example of?
Malonate is a classic competitive inhibitor of succinate dehydrogenase — it resembles the normal substrate succinate.
QWhat does cyanide do to enzymes?
Cyanide is an irreversible non-competitive inhibitor of cytochrome c oxidase, blocking cellular respiration. Highly toxic.
QWhat is the Q₁₀ value?
Q₁₀ (temperature coefficient) = 2 for most enzymes. Rate doubles for each 10°C rise within the physiological range.
QWhat is the Lineweaver-Burk plot?
A double-reciprocal plot (1/V vs 1/[S]) that yields a straight line. y-intercept = 1/Vmax, x-intercept = -1/Km.
QWhat are the industrial uses of enzymes?
Proteases in detergents, amylases in food processing, rennin in cheese, streptokinase in dissolving clots, Taq polymerase in PCR.
QHow do enzymes differ from inorganic catalysts?
Enzymes are biological, protein-based, highly specific, work at mild pH/temperature, and are regulated. Inorganic catalysts work at extreme conditions and are less specific.
QWhat is the transition state?
The high-energy, unstable intermediate state during a reaction. Enzymes stabilize it to lower activation energy.
QWhat are metalloenzymes?
Enzymes with a tightly bound metal ion as prosthetic group. Examples: carbonic anhydrase (Zn²⁺), cytochrome oxidase (Fe), arginase (Mn²⁺).
QHow are enzymes named?
Usually by the substrate + "-ase" (e.g., lactase, maltase). Some have historical names (pepsin, trypsin). Modern system uses EC numbers.
QWhat are the most frequently asked enzymes questions in MDCAT?
Apoenzyme/holoenzyme, competitive vs non-competitive inhibitors, optimum pH, lock-and-key vs induced fit, Km and Vmax, feedback inhibition.
QHow many MCQs come from Enzymes in MDCAT?
About 3–5 MCQs typically, but the concepts are used throughout biology so mastering them is essential.
📋Syllabus & Learning Outcomes
According to PMDC/PMC MDCAT syllabus, Enzymes cover:
- 6.1 Describe the distinguishing characteristics of enzymes.
- 6.2 Explain mechanism of action of enzymes.
- 6.3 Describe effects of factors on enzyme action (temperature, pH, and concentration).
- 6.4 Describe enzyme inhibitors.
📝Full Notes — Characteristics, Mechanism & Inhibitors
6.1 Characteristics of Enzymes
- Chemical nature: Globular proteins (except ribozymes – RNA enzymes).
- Catalytic power: Accelerate reactions by 10⁶–10¹² times without being consumed.
- Specificity: Absolute (one substrate) or group (similar substrates). Due to specific 3D active site.
- Reusability: Remain unchanged after reaction; tiny amounts suffice.
- Lower activation energy (Eₐ): Do not change ΔG; only lower the energy barrier.
- Heat labile: Denatured at high temperature (except thermostable enzymes like Taq polymerase).
- pH sensitive: Each enzyme has an optimum pH (e.g., pepsin ~2, trypsin ~8).
- Regulatable: Can be activated or inhibited.
- Co-factor requirement: Some require non-protein helpers:
- Inorganic cofactors: Zn²⁺, Mg²⁺, Fe²⁺.
- Coenzymes (organic): NAD⁺, FAD, coenzyme A (often vitamin-derived).
- Prosthetic groups: tightly bound cofactors (heme in catalase).
- Apoenzyme (protein part) + cofactor = Holoenzyme (active form).
Key: Holoenzyme = apoenzyme + cofactor. Apoenzyme is inactive; holoenzyme is active.
6.2 Mechanism of Enzyme Action
- Enzymes work by lowering activation energy (Eₐ) of a reaction.
- Active site: Specific cleft/crevice on enzyme surface where substrate binds. Formed by folding of polypeptide chain.
- Lock-and-Key Model (Emil Fischer, 1894): Active site rigidly matches substrate shape.
- Induced Fit Model (Koshland, 1959): Active site adjusts around substrate upon binding — more accurate.
- E + S ⇌ ES complex (transient intermediate).
- Bond rearrangement occurs → transition state stabilised.
- Products formed and released; enzyme unchanged.
Trap: Enzyme does NOT provide energy or change the nature of products. It does NOT affect equilibrium or ΔG — only increases rate.
6.3 Factors Affecting Enzyme Action
Temperature
- Rate increases with temperature (Q₁₀ ≈ 2; rate doubles per 10°C) up to optimum.
- Optimum temperature: Human enzymes ~37°C; thermophilic bacteria ~70°C+.
- Beyond optimum → denaturation (loss of 3D structure, H-bonds break → active site distorted).
- At very low temperature: enzyme inactive but NOT denatured (reversible).
pH
- Each enzyme has an optimum pH where activity is maximal.
- pH affects ionisation of active-site residues → alters substrate binding and catalysis.
- Extreme pH denatures enzyme by breaking ionic and H-bonds.
- Examples: Pepsin (pH 1.5–2), Salivary amylase (pH 6.8), Trypsin (pH 8), Pancreatic lipase (pH 9), Arginase (pH 9.7).
Substrate Concentration
- At fixed [E], velocity increases with [S] until Vmax (all active sites saturated).
- Michaelis constant (Km): [S] at which rate = ½ Vmax. Lower Km = higher affinity.
- Graph: rectangular hyperbola (Michaelis-Menten kinetics).
Enzyme Concentration
- At excess substrate, rate ∝ [E] (linear relationship).
6.4 Enzyme Inhibitors
| Type | Binds to | Effect on Vmax | Effect on Km |
| Competitive | Active site (resembles substrate) | Unchanged | Increased |
| Non-competitive | Allosteric site | Decreased | Unchanged |
| Irreversible | Covalent bond (destroys active site) | Decreased permanently | — |
- Competitive: e.g., statins (HMG-CoA reductase), malonate inhibits succinate dehydrogenase. Reversible by increasing [S].
- Non-competitive: e.g., cyanide inhibits cytochrome oxidase. Not overcome by [S].
- Irreversible: e.g., penicillin (transpeptidase), aspirin (COX), organophosphates (acetylcholinesterase).
- Feedback inhibition: End-product inhibits first enzyme of pathway (allosteric).
High-Yield Points & Common Traps
- Enzymes are proteins (except ribozymes); lower Eₐ; remain unchanged.
- Induced fit model > lock-and-key; active site is a 3D cleft.
- Holoenzyme = apoenzyme + cofactor; coenzymes are often vitamins.
- Optimum temp: human ~37°C; above → denaturation; low → inactivation (reversible).
- pH optimum: pepsin = acidic (2), trypsin = alkaline (8).
- Km: lower value = higher affinity for substrate.
- Competitive inhibitor: can be reversed by ↑ [S]; Vmax unchanged, Km increases.
- Non-competitive: Vmax decreases, Km unchanged.
- Feedback inhibition: end-product regulates pathway.
- Traps: "Enzyme provides energy" → False. "Enzymes change equilibrium" → False. "Denaturation at low temp" → False (only high temp/extreme pH).
❔Frequently Asked Questions
What are enzymes?
Enzymes are biological catalysts — mostly globular proteins (except ribozymes) — that speed up reactions by lowering activation energy without being consumed.
What is the difference between apoenzyme and holoenzyme?
Apoenzyme = inactive protein portion. Holoenzyme = active enzyme (apoenzyme + cofactor).
What is the difference between competitive and non-competitive inhibitors?
Competitive: binds active site, Vmax unchanged, Km increases. Non-competitive: binds allosteric site, Vmax decreases, Km unchanged.
What is the optimum pH for pepsin and trypsin?
Pepsin works best at pH ~2 (acidic, stomach). Trypsin works best at pH ~8 (alkaline, small intestine).
What is the lock-and-key model?
Proposed by Emil Fischer (1894) — the active site has a rigid, pre-shaped structure that fits the substrate like a lock fits a key.
What is the induced fit model?
Proposed by Koshland (1959) — the active site is flexible and changes shape upon substrate binding for optimal fit.
What is Km in enzyme kinetics?
Km is the substrate concentration at half Vmax. Lower Km = higher affinity between enzyme and substrate.
What is feedback inhibition?
Feedback inhibition: the end product of a pathway binds to an allosteric site on an earlier enzyme, inhibiting the pathway.
What are zymogens?
Zymogens (proenzymes) are inactive enzyme precursors activated by proteolytic cleavage. Example: pepsinogen → pepsin.
Why do enzymes denature at high temperature?
High temperatures break hydrogen bonds and hydrophobic interactions maintaining the enzyme's 3D shape. The active site is distorted and the enzyme loses activity.
What are ribozymes?
Ribozymes are RNA molecules with catalytic activity — the exception to "all enzymes are proteins".
What is a prosthetic group?
A prosthetic group is a cofactor that is tightly bound to the enzyme (covalent). Examples: heme in catalase, Zn²⁺ in carbonic anhydrase.
What is the Q₁₀ value for enzymes?
Q₁₀ ≈ 2 — reaction rate doubles for every 10°C rise in temperature within the physiological range.
What is the active site?
The active site is a 3D cleft on the enzyme where the substrate binds. It has two regions: the binding site (holds substrate) and the catalytic site (performs reaction).
How does pH affect enzyme activity?
Each enzyme has an optimum pH. Extreme pH alters the ionization state of amino acid residues at the active site, disrupting substrate binding and catalysis.
What are metalloenzymes?
Enzymes with a tightly bound metal ion as prosthetic group. Examples: carbonic anhydrase (Zn²⁺), cytochrome oxidase (Fe).
What is the Lineweaver-Burk plot?
A double-reciprocal plot (1/V vs 1/[S]) — a straight line. y-intercept = 1/Vmax, x-intercept = -1/Km.
What is allosteric regulation?
Allosteric regulation: a molecule binds to a site other than the active site, changing the enzyme's shape and activity.
What are the most commonly tested enzymes topics in MDCAT?
Apoenzyme/holoenzyme, competitive vs non-competitive inhibitors, optimum pH, lock-and-key vs induced fit, Km and Vmax, zymogens.
How many MCQs come from Enzymes in MDCAT?
About 3–5 MCQs typically, but the concepts are used throughout biology so mastering them is essential.